PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID SMil_00002674-RA_Salv
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Lamiales; Lamiaceae; Nepetoideae; Mentheae; Salvia
Family FAR1
Protein Properties Length: 764aa    MW: 87251.2 Da    PI: 6.6071
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
SMil_00002674-RA_SalvgenomeNDCTCMView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR165.81.1e-2073166190
                   FAR1   1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtklele 84 
                            +fY+++Ak++GFs+r+++++ +    + it+r+f+C + g+++ + +++ k +r+r+++r+gC+a +++ k+      +w+vt +++ 
  SMil_00002674-RA_Salv  73 EFYCSFAKQCGFSIRRHRTRGKdGVGRGITRRDFTCHRGGYPQLKPSADGKIQRNRKSSRCGCQAYMRIVKRAdfdVPEWRVTGFSNV 160
                            6***************999887455667********************9*******************98887676789********* PP

                   FAR1  85 HnHela 90 
                            HnHel 
  SMil_00002674-RA_Salv 161 HNHELL 166
                            ****96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.2E-1773166IPR004330FAR1 DNA binding domain
PfamPF105511.5E-21288380IPR018289MULE transposase domain
PROSITE profilePS509669.359567600IPR007527Zinc finger, SWIM-type
PfamPF044348.8E-9571598IPR007527Zinc finger, SWIM-type
SMARTSM005752.9E-5575602IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 764 aa     Download sequence    Send to blast
LSPYVDIVLT VVLKMTEQTD ILNETSENGS DSSRDDNGTI EEMPEDTILS RQTSVNLVPF  60
IGQRFVSQDA AYEFYCSFAK QCGFSIRRHR TRGKDGVGRG ITRRDFTCHR GGYPQLKPSA  120
DGKIQRNRKS SRCGCQAYMR IVKRADFDVP EWRVTGFSNV HNHELLKFNE VQLLPAYCTM  180
TPDDKSRICM YAKAGMSVRQ MLRLMELEKG IKLGCLPFSE VDVRNLLQSF RNVERDHDPI  240
DLLKMCKEKK DRDPSFKYNY RIDANNRLEH IAWSYASSIR LYETFGDVVV FDTTHRLDAY  300
DMLLGIWIGV DNHGSYCFFG CLLIRDENVQ SFSWGMKTFL DFMNGKAPGT ILTDQNTWLK  360
EALAMEMPGT KHAFSIWHII SKFSDWFSVT LGSHYDNWKA EFHRLYNLHN VDEFEIGWRE  420
MVDIYGLHGN KHIVSLYALR TYWALPFLRS YFFAGMSNTF QSETINSYIQ RFLSAQSMLD  480
DFVEQVASLL DARDRGAKPK TLQKVPKTSL KTGSPIESHA ATVLTPYAFC KLQEELVLAP  540
QYATMLVDDS YFIVRHHTEV DGGCKVLWVP QDEFITCSCC HFEFSGILCR HILRVLSTNN  600
CFQIPDQYLP LRWRDSLFTK PARTSSGKVQ LLQSMISSLI TESIETEDRL NVACDHIALV  660
LARIKDFPSA AADDSNGVAY TSPSGSFILP DVEDSDSIAQ SFSGNPHECL AFAKLKDRTT  720
RDEIDMYRKR RRCTVPCCGQ FGHEIGNCTM VADDDLNTDG LGFL
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1727731RKRRR
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011082429.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
RefseqXP_011082430.10.0PREDICTED: protein FAR1-RELATED SEQUENCE 11-like
SwissprotQ9SY660.0FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBLF6HZ840.0F6HZ84_VITVI; Putative uncharacterized protein
STRINGVIT_07s0005g01120.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA135351416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10240.10.0FAR1-related sequence 11